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yteP [2019-05-31 15:22:00]
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yteP [2019-05-31 15:22:00]

polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (transmembrane lipoprotein)
locus
BSU30135
pI
9.17
mw
37.00 kDa
protein length
321 aa Sequence Blast
gene length
966 bp Sequence Blast
function
uptake of polygalacturonan and rhamnogalacturonan
product
polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (transmembrane lipoprotein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,082,260 3,083,225

    The protein

    Paralogous protein(s)

  • [protein|AA19541BCCAE08B48BD23F4E8337EBA220E5C4EF|LplB]

    • Structure

  • [PDB|4TQU] (from Sphingomonas sp., 43% identity) [pubmed|26235029]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]-[gene|40787292458E5C6676F9F4F6F34C0D6BD5313DE1|yteR]-[gene|1482FD92CB6DC966263F08AD109769728FC708E4|yteS]-[gene|484D17480DFAD3667E0EBC6D38854A7546A8DB46|yteT]-[gene|103A912E971E5760DBA45CC0681D77CED61D1FED|yteU]-[gene|FCAE9513D764B7A9AAB9C59E6CE1D65C400D4B44|yteV]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A809 (yteP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/809 NBRP B. subtilis, Japan]
  • BKE30135 ([gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30135 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCCTAGCCTCCTT, downstream forward: _UP4_TAGGAAAGGGATGGGATCAA
  • BKK30135 ([gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30135 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTCCTAGCCTCCTT, downstream forward: _UP4_TAGGAAAGGGATGGGATCAA

    • References

  • 10092453,17449691,29240795,26235029